All Entries for the Executable Paper Grand Challenge

This post originally appeared on the Software Carpentry website.

I don't know how I missed this, but at last year's International Conference on Computational Science, two dozen different groups presented papers in response to Elsevier's Executable Paper challenge. PDFs of their work are all online, and links are included below. As I've said before, one of our goals is to give researchers the skills they need to do this kind of thing; looking through these papers, we've still got a ways to go.

• Ann Gabriel, Rebecca Capone: Executable Paper Grand Challenge Workshop
• Konrad Hinsen: A data and code model for reproducible research and executable papers
• Pieter Van Gorp, Steffen Mazanek: SHARE: a web portal for creating and sharing executable research papers
• Michael Kohlhase, Joseph Corneli, Catalin David, Deyan Ginev, Constantin Jucovschi, Andrea Kohlhase, Christoph Lange, Bogdan Matican, Stefan Mirea, Vyacheslav Zholudev: The Planetary System: Web 3.0 & Active Documents for STEM
• Piotr Nowakowski, Eryk Ciepiela, Daniel Harezlak, Joanna Kocot, Marek Kasztelnik, Tomasz Bartynski, Jan Meizner, Grzegorz Dyk, Maciej Malawski: The Collage Authoring Environment
• Friedrich Leisch, Manuel Eugster, Torsten Hothorn: Executable Papers for the R Community: The R2 Platform for Reproducible Research
• Wolfgang Müller, Isabel Rojas, Andreas Eberhart, Peter Haase, Michael Schmidt: A-R-E: The Author-Review-Execute Environment
• Matan Gavish, David Donoho: A Universal Identifier for Computational Results
• David Koop, Emanuele Santos, Phillip Mates, Huy T. Vo, Philippe Bonnet, Bela Bauer, Brigitte Surer, Matthias Troyer, Dean N. Williams, Joel E. Tohline, Juliana Freire, Cláudio T. Silva: A Provenance-Based Infrastructure to Support the Life Cycle of Executable Papers
• Grant R. Brammer, Ralph W. Crosby, Suzanne J. Matthews, Tiffani L. Williams: Paper Máché: Creating Dynamic Reproducible Science
• J. Siciarek, B. Wiszniewski: IODA — an Interactive Open Document Architecture
• Sandor M Veres, J. Patrik Adolfsson: A natural language programming solution for executable papers
• Antonio T.A. Gomes, Diego Paredes, Frédéric Valentin: Supporting the Perpetuation and Reproducibility of Numerical Method Publications
• Guillaume Jourjon, Thierry Rakotoarivelo, Christoph Dwertmann, Maximilian Ott: International Conference on Computational Science, ICCS 2011 LabWiki: An Executable Paper Platform for Experiment-based Research
• Rudolf Strijkers, Reginald Cushing, Dmitry Vasyunin, Cees de Laat, Adam S.Z. Belloum, Robert Meijer: Toward Executable Scientific Publications
• Nicolas Limare, Jean-Michel Morel: The IPOL Initiative: Publishing and Testing Algorithms on Line for Reproducible Research in Image Processing
• Tomi Kauppinen, Giovana Mira de Espindola: Linked Open Science-Communicating, Sharing and Evaluating Data, Methods and Results for Executable Papers
• Kenton McHenry, Michal Ondrejcek, Luigi Marini, Rob Kooper, Peter Bajcsy: Towards a Universal Viewer for Digital Content
• Nicola Ferro, Allan Hanbury, Henning Müller, Giuseppe Santucci: Harnessing the Scientific Data Produced by the Experimental Evaluation Search Engines and Information Access Systems
• Steven R. Brandt, Oleg Korobkin, Frank Löffler, Jian Tao, Erik Schnetter, Ian Hinder, Dennis Castleberry, Michael Thomas: The Prickly Pear Archive
• Rubens C. Machado, Leticia Rittner, Roberto A. Lotufo: Adessowiki — Collaborative platform for writing executable papers
• Jim Austin, Tom Jackson, Martyn Fletcher, Mark Jessop, Bojian Liang, Mike Weeks, Leslie Smith, Colin Ingram, Paul Watson: CARMEN: Code analysis, Repository and Modeling for e-Neuroscience
• Y.-A. Le Borgne, A. Campo: Open Review in computer science Elsevier grand challenge on executable papers